Eivind Tøstesen:


Eivind Tøstesen | LinkedIn
Connect with me on LinkedIn.
Eivind Tøstesen | Facebook
Befriend me on Facebook.
Eivind Tøstesen | TED Translator | TED.com
I make subtitles for my favourite TED Talk videos.
HiFiSalsa.dk
I write about salsa dance and music and I help run the HiFiSalsa website.
Profilen til eivindtostesen - GeoGebra
I make teaching materials for math and physics in GeoGebra.
Slægt.tostesen.dk
Occasionally, I do some Tøstesen genealogy.
Eivind Tostesen | PhDTree
Climb my academic genealogy tree (just for fun).

Scientific software

Stitchprofiles.uio.no
Web version of my software for the stochastic physics of DNA molecules.
Hyperbrowser.uio.no
The Genomic Hyperbrowser is a website for analyzing genomic annotations (big data approach).
Bubblyhelix.org
Bubblyhelix is a software package for modeling the thermodynamics of large DNA.
Exiqon's Tm prediction tool
A tool for predicting melting temperatures of LNA oligonucleotides.
Meltmap.uio.no
Code, data and tools for the human genomic melting map.
DNA.utah.edu/uMelt
uMelt is a web-based application created at the Wittwer Lab to predict DNA melting curves, with another instance of our algorithm.

Academic theses

Ph.D. thesis:
RNA folding transitions
E. Tøstesen.
Supervisors: Ken Dill, Jakob Bohr and Henrik Bohr.
Department of Physics, Technical University of Denmark (1999).
download PDF | Google books
Master thesis:
Dynamics of hierarchically clustered cooperating agents
E. Tøstesen.
Supervisors: Bernardo Huberman, John Hertz and Benny Lautrup.
Niels Bohr Institute, University of Copenhagen (1995).
download PDF | Google books
B.Sc. thesis:
Informationsteori og maksimumentropiprincippet
E. Tøstesen, C. Poulsen and S. Barsberg.
Supervisors: Flemming Topsøe and Stig Steenstrup.
University of Copenhagen (1992).

arXiv.org

Here's a list of abstracts of my articles on arXiv.org, the e-print service at Cornell University.

Cristin.no

Here's my publication list on Cristin.no, the Current Research Information SysTem In Norway.

Scientific publications

The differential disease regulome
G.K. Sandve, S. Gundersen, H. Rydbeck, I. Glad, L. Holden, M. Holden, K. Liestøl, T. Clancy, F. Drabløs, E. Ferkingstad, M. Johansen, V. Nygård, E. Tøstesen, A. Frigessi and E. Hovig.
BMC Genomics, 12, 353 (2011).
download PDF | DOI: 10.1186/1471-2164-12-353 | PMID: 21736759 | Supplementary material

The Genomic HyperBrowser: inferential genomics at the sequence level
G. K. Sandve, S. Gundersen, H. Rydbeck, I. Glad, L. Holden, M. Holden, K. Liestøl, T. Clancy, E. Ferkingstad, M. Johansen, V. Nygård, E. Tøstesen, A. Frigessi and E. Hovig.
Genome Biology, 11, R121 (2010).
download PDF | DOI: 10.1186/gb-2010-11-12-r121 | PMID: 21182759 | arXiv:1101.4898 | Supplementary material

Segmentation of DNA sequences into twostate regions and melting fork regions
E. Tøstesen, G. K. Sandve, F. Liu and E. Hovig.
J. Phys.: Condens. Matter, 21, 034109 (2009).
download PDF | DOI: 10.1088/0953-8984/21/3/034109 | arXiv:0806.2059v2

A stitch in time: Efficient computation of genomic DNA melting bubbles
E. Tøstesen.
Algorithms for Molecular Biology, 3, 10 (2008).
download PDF | DOI: 10.1186/1748-7188-3-10 | PMID: 18637171 | arXiv:0802.1057v1

The human genomic melting map
F. Liu, E. Tøstesen, J. K. Sundet, T.-K. Jenssen, C. Bock, G. I. Jerstad, W. G. Thilly and E. Hovig.
PLoS Comput Biol 3(5), e93 (2006).
download PDF | DOI: 10.1371/journal.pcbi.0030093 | PMID: 17511513 | Supplementary material

Partly melted DNA conformations obtained with a probability peak finding method
E. Tøstesen.
Phys. Rev. E, 71, 061922 (2005).
download PDF | DOI: 10.1103/PhysRevE.71.061922 | PMID: 16089780 | arXiv:q-bio.BM/0404019v4 | Mirrored in Virtual Journal of Biological Physics Research | Supplementary material

Stitchprofiles.uio.no: Analysis of partly melted DNA conformations using stitch profiles
E. Tøstesen, G. I. Jerstad and E. Hovig.
Nucl. Acids Res., 33, w573-w576 (2005).
download PDF | DOI: 10.1093/nar/gki424 | PMID: 15980539

Speed-up of DNA melting algorithm with complete nearest neighbor properties
E. Tøstesen, F. Liu, T.-K. Jenssen and E. Hovig.
Biopolymers, 70, 364-376 (2003).
download PDF | DOI: 10.1002/bip.10495 | PMID: 14579309 | arXiv:q-bio.BM/0401011v1

RNA folding transitions and cooperativity
E. Tøstesen, S.-J. Chen and K. A. Dill.
J. Phys. Chem. B, 105, 1618-1630 (2001).
download PDF | DOI: 10.1021/jp002877q

Conference posters and papers

The human genomic SNP melting map project.
E. Tøstesen and E. Hovig.
Poster at Norwegian Bioinformatics Forum 2010, Oslo, Norway.
download PDF

Genome-wide Comparison of DNA Melting Bubbles and Ensembl's Genomic Annotations.
G. I. Jerstad, E. Tøstesen, T. Rognes and E. Hovig.
Poster at ISMB 2006, Fortaleza, Brazil.
download PDF

Prediction of Melting Temperature for LNA (Locked Nucleic Acid) Modified Oligonucleotides.
E. Tøstesen, N. Jacobsen, A.T. Nielsen, J.G. Kolberg and H. Vissing.
Poster at Bioinformatics 2002, Bergen, Norway.
download PDF

Optimal Design of Oligos for Microarray Gene Expression Profiling.
N. Tolstrup, J.G. Kolberg, A.M. Frankel, E. Tøstesen, S.M. Echwald, P.S. Nielsen, S. Kauppinen and H. Vissing.
Poster at ISMB 2002, Edmonton, Canada.
download PDF

Designing RNA folding cooperativity
E. Tøstesen, S.-J. Chen and K. A. Dill.
In Statistical Mechanics of Biocomplexity, pp. 56-61, D. Reguera, J. M. Rubi, J. M. G. Vilar (Eds.), Lecture Notes in Physics 527, Springer-Verlag, Berlin (1999).
Proceedings of the XV Sitges Conference, Barcelona, Spain.
DOI: 10.1007/BFb0105007 | Google books

Science journalism

Tolker arvematerialet
Yngve Vogt interviewed us about our research in Apollon 2, 22, (2005).
download PDF | online article

Ising-modeller af sociale systemer?
E. Tøstesen.
Gamma tidsskrift for fysik, 100, 14-22 (1996).
download PDF

Music journalism

Æblet falder ikke langt fra stammen
E. Tøstesen.
CD review in HiFiSalsa (2012).
online article

Interview - Manolito: Lyden af cubansk musik er ikke generel
E. Tøstesen.
Interview in HiFiSalsa (2011).
online article

Interview: Ti år med HiFiSalsa
E. Tøstesen and B. Kristensen.
Self-interview in HiFiSalsa (2010).
online article

Van van van...i samme rille?
E. Tøstesen.
Concert review in HiFiSalsa (2008).
online article

Grupo Danson sprænger lydmuren
E. Tøstesen.
CD review in HiFiSalsa (2006).
online article

Hjemme hos Mayito - Los Van Van
E. Tøstesen.
Interview in HiFiSalsa (2005).
online article

Radiointerview med Eliades Ochoa
E. Tøstesen and L. Koch.
Interview in HiFiSalsa (2004), first broadcast in KøbenhavnerKanalen (2000).
online article

Interview med Charanga Forever
E. Tøstesen.
Interview in HiFiSalsa (2003).
online article

Jacobs speciale om den cubanske timba
E. Tøstesen.
Book review in HiFiSalsa (2002).
online article

Interview med Giraldo Piloto
E. Tøstesen and B. Øverland.
Interview in HiFiSalsa (2002).
online article

Salsa-Musikkens Saga
E. Tøstesen.
Article in HiFiSalsa (2000).
[download PDF] download PDF (shortened version) | online article



Last update: June 2015

© 2011-2015 Eivind Tøstesen